Variant report

Variant	rs12206694
Chromosome Location	chr6:149595191-149595192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10457845	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190668	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12202776	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12204289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12211226	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149586600-149597000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:149591800-149595600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:149591800-149596600	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:149592000-149596200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:149592200-149596200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:149592600-149596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:149592600-149596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149593200-149595400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr6:149593400-149596200	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:149594000-149596200	Enhancers	Primary B cells from cord blood	blood
11	chr6:149594800-149596000	Weak transcription	Spleen	Spleen
12	chr6:149595000-149596800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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