Variant report

Variant	rs10457845
Chromosome Location	chr6:149574344-149574345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12190668	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12202776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12204289	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12206694	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12211226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149568400-149575200	Weak transcription	Spleen	Spleen
2	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
3	chr6:149570200-149576200	Weak transcription	Fetal Lung	lung
4	chr6:149570800-149574600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:149570800-149581600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:149570800-149581600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:149571000-149576800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:149571000-149582200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:149571200-149575400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149571200-149577000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:149572600-149574600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:149574000-149574400	Enhancers	Adipose Nuclei	Adipose
13	chr6:149574200-149577000	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links