Variant report

Variant	rs12211226
Chromosome Location	chr6:149557014-149557015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149556751..149560546-chr6:149560823..149562972,3	MCF-7	breast:
2	chr6:149555445..149557100-chr6:149637595..149639375,2	K562	blood:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10457845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12190668	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12197526	0.81[EUR][1000 genomes]
rs12197595	0.81[EUR][1000 genomes]
rs12200718	0.81[EUR][1000 genomes]
rs12202447	0.81[EUR][1000 genomes]
rs12202776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12204289	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12206090	0.82[EUR][1000 genomes]
rs12206694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12213399	0.81[EUR][1000 genomes]
rs9498253	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149542200-149560600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:149545800-149557800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:149545800-149560200	Weak transcription	Right Atrium	heart
4	chr6:149549600-149557200	Weak transcription	Fetal Stomach	stomach
5	chr6:149550200-149557800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:149551000-149557600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:149551800-149558000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:149553400-149557200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:149553800-149558200	Enhancers	HUVEC	blood vessel
10	chr6:149554000-149557200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:149554000-149558200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:149554200-149558000	Weak transcription	Brain Anterior Caudate	brain
13	chr6:149554400-149557400	Weak transcription	Fetal Heart	heart
14	chr6:149554600-149557400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:149555000-149557400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:149555200-149557200	Enhancers	Osteobl	bone
17	chr6:149555200-149557400	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:149555400-149557200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr6:149555600-149557400	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:149555600-149562200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:149555800-149557200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:149555800-149557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:149555800-149561000	Weak transcription	Stomach Mucosa	stomach
24	chr6:149556000-149557200	Enhancers	Primary B cells from cord blood	blood
25	chr6:149556000-149557800	Enhancers	Hela-S3	cervix
26	chr6:149556200-149557200	Weak transcription	Brain Germinal Matrix	brain
27	chr6:149556200-149557200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:149556200-149557800	Enhancers	NH-A	brain
29	chr6:149556600-149557800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:149556800-149557400	Enhancers	Brain Substantia Nigra	brain
31	chr6:149556800-149558000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:149557000-149557200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:149557000-149557200	Enhancers	GM12878-XiMat	blood
34	chr6:149557000-149557800	Weak transcription	Ovary	ovary
35	chr6:149557000-149558000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:149557000-149558000	Weak transcription	Fetal Lung	lung
37	chr6:149557000-149558000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:149557000-149558400	Enhancers	Brain Hippocampus Middle	brain
39	chr6:149557000-149560200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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