Variant report

Variant	rs12236725
Chromosome Location	chr9:73038217-73038218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11142420	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11142431	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142434	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142435	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142441	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142443	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11142452	0.84[AMR][1000 genomes]
rs12238429	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13291393	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34775197	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744598	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4745011	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73035800-73039200	Enhancers	Spleen	Spleen
2	chr9:73036200-73039200	Enhancers	Psoas Muscle	Psoas
3	chr9:73036400-73040600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:73036600-73039400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:73036600-73039800	Weak transcription	Aorta	Aorta
6	chr9:73036600-73040000	Weak transcription	Lung	lung
7	chr9:73036800-73038800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:73037200-73042600	Weak transcription	Stomach Mucosa	stomach
9	chr9:73037400-73042000	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:73037600-73038800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr9:73037600-73040200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:73037600-73042800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:73037600-73050400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:73037800-73042200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:73037800-73042600	Weak transcription	Right Ventricle	heart
16	chr9:73037800-73049800	Weak transcription	HUVEC	blood vessel
17	chr9:73038000-73039800	Weak transcription	Right Atrium	heart
18	chr9:73038200-73038400	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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