Variant report

Variant	rs12238429
Chromosome Location	chr9:73062145-73062146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73033529..73035181-chr9:73061625..73063728,2	K562	blood:
2	chr9:73053817..73058794-chr9:73059603..73063143,5	K562	blood:
3	chr9:73057030..73058666-chr9:73061643..73063503,2	K562	blood:
4	chr9:73057572..73059565-chr9:73061963..73063718,2	MCF-7	breast:
5	chr9:73060372..73062817-chr9:73063576..73065144,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11142345	1.00[AFR][1000 genomes]
rs11142420	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11142431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142451	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142452	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142453	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142454	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142462	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142464	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142465	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142467	0.85[EUR][1000 genomes]
rs12236725	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13291393	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13298975	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1556739	0.87[EUR][1000 genomes]
rs34775197	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858108	0.83[AFR][1000 genomes]
rs4744598	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745011	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745012	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9644995	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73053600-73071000	Weak transcription	Right Atrium	heart
2	chr9:73054000-73065000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:73054400-73066600	Weak transcription	Psoas Muscle	Psoas
4	chr9:73060600-73063800	Weak transcription	K562	blood

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