Variant report

Variant	rs13298975
Chromosome Location	chr9:73093202-73093203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:73030761..73038680-chr9:73091043..73101036,27	MCF-7	breast:
2	chr9:73026617..73037908-chr9:73091853..73102499,30	K562	blood:
3	chr9:73030963..73039331-chr9:73089885..73101071,36	MCF-7	breast:
4	chr9:73085757..73088696-chr9:73091890..73094537,4	K562	blood:
5	chr9:73025336..73030126-chr9:73090773..73099381,13	MCF-7	breast:
6	chr9:73034292..73034892-chr9:73092889..73093573,2	MCF-7	breast:
7	chr9:73032746..73034750-chr9:73091701..73093389,2	K562	blood:
8	chr9:73025505..73030167-chr9:73091131..73097285,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119138	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11142420	0.81[EUR][1000 genomes]
rs11142431	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11142434	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11142435	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11142441	0.87[EUR][1000 genomes]
rs11142443	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142451	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11142452	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142453	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142454	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142462	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11142464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11142465	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142467	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12238429	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13291393	0.83[EUR][1000 genomes]
rs1556739	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34775197	0.81[EUR][1000 genomes]
rs4744598	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4745011	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4745012	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9644995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73085000-73093800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:73086000-73093800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:73086000-73094200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:73086200-73094000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:73086400-73094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:73086600-73097400	Enhancers	Left Ventricle	heart
7	chr9:73086800-73095800	Enhancers	Pancreas	Pancrea
8	chr9:73087200-73097000	Enhancers	Right Atrium	heart
9	chr9:73087800-73094600	Weak transcription	Osteobl	bone
10	chr9:73088600-73107200	Weak transcription	Gastric	stomach
11	chr9:73089600-73093800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:73089600-73094200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:73090600-73094200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:73091000-73094000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:73091200-73093400	Weak transcription	Lung	lung
16	chr9:73091200-73093800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:73091600-73093800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr9:73091600-73094400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:73091800-73093800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:73091800-73094800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:73091800-73095200	Enhancers	Psoas Muscle	Psoas
22	chr9:73092200-73094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:73092200-73095000	Enhancers	Colon Smooth Muscle	Colon
24	chr9:73092400-73093800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:73092400-73093800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:73092400-73093800	Weak transcription	HMEC	breast
27	chr9:73092400-73093800	Weak transcription	HSMM	muscle
28	chr9:73092400-73094000	Weak transcription	HSMMtube	muscle
29	chr9:73092400-73094000	Weak transcription	NHEK	skin
30	chr9:73092600-73094000	Weak transcription	HUVEC	blood vessel
31	chr9:73092600-73096800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:73092800-73093800	Enhancers	Rectal Smooth Muscle	rectum
33	chr9:73092800-73094000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:73092800-73094800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr9:73092800-73094800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:73092800-73094800	Enhancers	Right Ventricle	heart
37	chr9:73092800-73095000	Enhancers	Brain Anterior Caudate	brain
38	chr9:73092800-73095200	Enhancers	Adipose Nuclei	Adipose
39	chr9:73092800-73095400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:73093000-73093400	Enhancers	Fetal Heart	heart
41	chr9:73093000-73094400	Enhancers	Aorta	Aorta
42	chr9:73093000-73094600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:73093000-73095200	Enhancers	Brain Hippocampus Middle	brain
44	chr9:73093000-73095400	Enhancers	Fetal Lung	lung
45	chr9:73093000-73095600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:73093000-73096800	Enhancers	Stomach Mucosa	stomach
47	chr9:73093000-73097600	Enhancers	Ovary	ovary
48	chr9:73093200-73093400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr9:73093200-73093400	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr9:73093200-73094600	Enhancers	Liver	Liver

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