Variant report

Variant	rs4744598
Chromosome Location	chr9:73066473-73066474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73025618..73029418-chr9:73063938..73067542,4	K562	blood:
2	chr9:73057677..73059715-chr9:73066008..73068900,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11142345	0.86[AFR][1000 genomes]
rs11142420	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11142431	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142434	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142435	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142451	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142452	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142453	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142454	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142462	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142464	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142465	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11142467	0.85[EUR][1000 genomes]
rs12236725	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12238429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291393	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13298975	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1556739	0.87[EUR][1000 genomes]
rs34775197	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4745011	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745012	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9644995	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73053600-73071000	Weak transcription	Right Atrium	heart
2	chr9:73054400-73066600	Weak transcription	Psoas Muscle	Psoas
3	chr9:73064600-73071000	Weak transcription	Right Ventricle	heart
4	chr9:73065400-73070800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:73066000-73071000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:73066400-73067600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:73066400-73070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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