Variant report

Variant	rs11142434
Chromosome Location	chr9:73056214-73056215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73034281..73038222-chr9:73053747..73058786,6	K562	blood:
2	chr9:73053817..73058794-chr9:73059603..73063143,5	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11142345	1.00[AFR][1000 genomes]
rs11142420	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11142431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142441	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142451	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142452	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142453	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142454	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142462	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11142464	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11142465	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11142467	0.82[EUR][1000 genomes]
rs12236725	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12238429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291393	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13298975	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1556739	0.84[EUR][1000 genomes]
rs34775197	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858108	0.83[AFR][1000 genomes]
rs4744598	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745011	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745012	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9644995	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73053200-73057600	Enhancers	HepG2	liver
2	chr9:73053600-73071000	Weak transcription	Right Atrium	heart
3	chr9:73053800-73056600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:73054000-73057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:73054000-73065000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:73054200-73057600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:73054400-73057400	Weak transcription	Left Ventricle	heart
8	chr9:73054400-73066600	Weak transcription	Psoas Muscle	Psoas
9	chr9:73054600-73057600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:73056000-73056400	Weak transcription	HUVEC	blood vessel
11	chr9:73056000-73057000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:73056000-73059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:73056200-73057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:73056200-73057400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:73056200-73059600	Weak transcription	Muscle Satellite Cultured Cells	--

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