Variant report

Variant	rs12240709
Chromosome Location	chr10:4187354-4187355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4185617..4187923-chr10:4190496..4192874,2	MCF-7	breast:
2	chr10:4181331..4184177-chr10:4186072..4188584,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11252371	1.00[AMR][1000 genomes]
rs11252375	1.00[AMR][1000 genomes]
rs12240890	1.00[AMR][1000 genomes]
rs12243522	1.00[AMR][1000 genomes]
rs12253334	1.00[AMR][1000 genomes]
rs57295116	1.00[AMR][1000 genomes]
rs57782413	0.83[AMR][1000 genomes]
rs73599477	1.00[AMR][1000 genomes]
rs73599479	1.00[AMR][1000 genomes]
rs73601442	1.00[AMR][1000 genomes]
rs73601447	0.83[AMR][1000 genomes]
rs73601451	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4184200-4193600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:4186800-4187400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:4186800-4187400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:4186800-4187400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:4186800-4187600	Enhancers	NHEK	skin
6	chr10:4187000-4187400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:4187000-4187400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:4187000-4187400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:4187000-4187400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:4187000-4187400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:4187000-4187400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:4187000-4187400	Enhancers	A549	lung
13	chr10:4187000-4187400	Enhancers	HSMM	muscle
14	chr10:4187000-4187400	Enhancers	NH-A	brain
15	chr10:4187000-4187400	Enhancers	NHDF-Ad	bronchial
16	chr10:4187000-4187400	Enhancers	Osteobl	bone
17	chr10:4187000-4187600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:4187000-4187600	Enhancers	HMEC	breast
19	chr10:4187000-4187600	Enhancers	HSMMtube	muscle
20	chr10:4187200-4187400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:4187200-4187400	Enhancers	Esophagus	oesophagus
22	chr10:4187200-4187400	Enhancers	Hela-S3	cervix
23	chr10:4187200-4187600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:4187200-4187600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:4187200-4187600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr10:4187200-4189200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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