Variant report

Variant	rs73599477
Chromosome Location	chr10:4176283-4176284
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11252371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11252375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240709	1.00[AMR][1000 genomes]
rs12240890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2397400	1.00[ASN][1000 genomes]
rs57295116	1.00[AMR][1000 genomes]
rs57782413	0.83[AMR][1000 genomes]
rs73599479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601442	1.00[AMR][1000 genomes]
rs73601447	0.83[AMR][1000 genomes]
rs73601451	0.83[AMR][1000 genomes]
rs7902310	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407901	chr10:4172452-4176750	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4174800-4177200	Weak transcription	GM12878-XiMat	blood
2	chr10:4174800-4178000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:4174800-4178400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:4174800-4178800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:4174800-4179600	Weak transcription	HSMMtube	muscle
6	chr10:4174800-4187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:4175000-4180000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:4175200-4176800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:4175200-4177000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:4175200-4177200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:4175200-4177800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:4175200-4178000	Weak transcription	Primary B cells from cord blood	blood
13	chr10:4175200-4178000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:4175200-4178000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:4175200-4178000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:4175400-4177400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:4175400-4178000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:4175400-4178000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:4175800-4177600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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