Variant report

Variant	rs12253334
Chromosome Location	chr10:4194100-4194101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11252371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11252375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240709	1.00[AMR][1000 genomes]
rs12240890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57295116	1.00[AMR][1000 genomes]
rs57782413	0.83[AMR][1000 genomes]
rs73599477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73599479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601442	1.00[AMR][1000 genomes]
rs73601447	0.83[AMR][1000 genomes]
rs73601451	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4193200-4194600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:4193600-4194200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:4193600-4194400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:4193800-4194200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:4194000-4203400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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