Variant report

Variant	rs12242632
Chromosome Location	chr10:21582018-21582019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21580744..21583454-chr10:21586325..21588483,2	K562	blood:
2	chr10:21575135..21577702-chr10:21580493..21582112,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047401	1.00[EUR][1000 genomes]
rs11012675	1.00[EUR][1000 genomes]
rs11012678	1.00[EUR][1000 genomes]
rs11012682	1.00[EUR][1000 genomes]
rs11012684	1.00[EUR][1000 genomes]
rs12241226	1.00[EUR][1000 genomes]
rs12243488	1.00[EUR][1000 genomes]
rs12245113	1.00[EUR][1000 genomes]
rs12251668	1.00[EUR][1000 genomes]
rs12252629	1.00[EUR][1000 genomes]
rs12254848	1.00[EUR][1000 genomes]
rs12256510	1.00[EUR][1000 genomes]
rs12260172	1.00[EUR][1000 genomes]
rs12265937	1.00[EUR][1000 genomes]
rs12268089	1.00[EUR][1000 genomes]
rs16921775	1.00[EUR][1000 genomes]
rs28870418	1.00[EUR][1000 genomes]
rs7075558	1.00[EUR][1000 genomes]
rs7084081	1.00[EUR][1000 genomes]
rs7084932	1.00[EUR][1000 genomes]
rs7092377	1.00[EUR][1000 genomes]
rs7097605	1.00[EUR][1000 genomes]
rs73592524	1.00[EUR][1000 genomes]
rs7902413	1.00[EUR][1000 genomes]
rs7904105	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21567400-21582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:21571600-21583000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:21576400-21583200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:21579400-21582600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:21580000-21583000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:21580000-21583200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:21580200-21582800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:21580400-21582200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:21580600-21583200	Enhancers	HSMMtube	muscle
10	chr10:21580600-21583600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:21580800-21582800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:21580800-21583200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr10:21580800-21583600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:21580800-21583600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr10:21581000-21582400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr10:21581000-21582400	Flanking Active TSS	Osteobl	bone
17	chr10:21581200-21582200	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr10:21581200-21582200	Active TSS	NHLF	lung
19	chr10:21581200-21582600	Active TSS	H1 Cell Line	embryonic stem cell
20	chr10:21581200-21583400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:21581400-21582400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:21581400-21582600	Active TSS	A549	lung
23	chr10:21581400-21582600	Flanking Active TSS	HUVEC	blood vessel
24	chr10:21581400-21582800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:21581400-21583600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:21581600-21582200	Active TSS	H9 Cell Line	embryonic stem cell
27	chr10:21581600-21582200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:21581600-21582200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:21581600-21582200	Active TSS	Brain Hippocampus Middle	brain
30	chr10:21581600-21582200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:21581600-21582200	Active TSS	Brain Substantia Nigra	brain
32	chr10:21581600-21582200	Active TSS	Colon Smooth Muscle	Colon
33	chr10:21581600-21582200	Active TSS	Fetal Brain Male	brain
34	chr10:21581600-21582200	Flanking Active TSS	Fetal Heart	heart
35	chr10:21581600-21582200	Active TSS	NH-A	brain
36	chr10:21581600-21582400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:21581600-21582400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:21581600-21582400	Active TSS	Brain Anterior Caudate	brain
39	chr10:21581600-21582400	Active TSS	Brain Cingulate Gyrus	brain
40	chr10:21581600-21582400	Active TSS	Ovary	ovary
41	chr10:21581600-21582400	Active TSS	Stomach Smooth Muscle	stomach
42	chr10:21581600-21582400	Flanking Active TSS	NHEK	skin
43	chr10:21581600-21582600	Active TSS	Right Atrium	heart
44	chr10:21581600-21582600	Flanking Active TSS	HMEC	breast
45	chr10:21581800-21582200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:21581800-21582200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:21581800-21582200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
48	chr10:21581800-21582200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
49	chr10:21581800-21582200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:21581800-21582200	Bivalent Enhancer	Liver	Liver

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