Variant report

Variant	rs12251668
Chromosome Location	chr10:21676469-21676470
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21675580..21678521-chr10:21678649..21680738,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10047401	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466076	0.87[AMR][1000 genomes]
rs10466077	0.87[AMR][1000 genomes]
rs10466079	0.87[AMR][1000 genomes]
rs11012675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012678	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012682	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11012684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012685	0.87[AMR][1000 genomes]
rs12241226	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242632	1.00[EUR][1000 genomes]
rs12243488	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245113	1.00[EUR][1000 genomes]
rs12252629	1.00[EUR][1000 genomes]
rs12254848	1.00[EUR][1000 genomes]
rs12255576	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256510	1.00[EUR][1000 genomes]
rs12260172	1.00[EUR][1000 genomes]
rs12265937	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268089	1.00[EUR][1000 genomes]
rs16921775	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28870418	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071159	0.87[AMR][1000 genomes]
rs7075558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7092377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093106	0.87[AMR][1000 genomes]
rs7097605	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73592524	1.00[EUR][1000 genomes]
rs7902413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904105	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21673600-21677400	Enhancers	Placenta	Placenta
4	chr10:21674600-21677600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr10:21674600-21678200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21675000-21681000	Weak transcription	A549	lung
7	chr10:21675400-21676600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:21675400-21676800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:21675400-21676800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:21675600-21676600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:21675600-21676800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:21675600-21676800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:21676000-21676800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:21676000-21677400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:21676400-21678200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr10:21676400-21678200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:21676400-21678200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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