Variant report

Variant	rs7097605
Chromosome Location	chr10:21656559-21656560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21654775..21657388-chr10:21784065..21786314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222071	Chromatin interaction
ENSG00000204682	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10047401	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466076	0.87[AMR][1000 genomes]
rs10466077	0.87[AMR][1000 genomes]
rs10466079	0.87[AMR][1000 genomes]
rs11012675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012678	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012682	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11012684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012685	0.87[AMR][1000 genomes]
rs12241226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242632	1.00[EUR][1000 genomes]
rs12243488	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245113	1.00[EUR][1000 genomes]
rs12251668	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252629	1.00[EUR][1000 genomes]
rs12254848	1.00[EUR][1000 genomes]
rs12255576	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256510	1.00[EUR][1000 genomes]
rs12260172	1.00[EUR][1000 genomes]
rs12265937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268089	1.00[EUR][1000 genomes]
rs16921775	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28870418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071159	0.87[AMR][1000 genomes]
rs7075558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7092377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093106	0.87[AMR][1000 genomes]
rs73592524	1.00[EUR][1000 genomes]
rs7902413	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904105	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21652200-21658000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
3	chr10:21652400-21657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:21652600-21658000	Weak transcription	Fetal Stomach	stomach
5	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:21652800-21661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:21653800-21657400	Weak transcription	Fetal Kidney	kidney
8	chr10:21654000-21661600	Weak transcription	NHLF	lung
9	chr10:21654000-21661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:21654000-21662000	Weak transcription	Spleen	Spleen
11	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:21654200-21656600	Weak transcription	Fetal Lung	lung
13	chr10:21654200-21656800	Enhancers	A549	lung
14	chr10:21654200-21657600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:21654200-21658000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:21654200-21658200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:21654200-21661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:21654200-21661800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:21654200-21661800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:21654200-21662000	Weak transcription	K562	blood
21	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:21654400-21657200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:21654400-21657400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:21654400-21657400	Weak transcription	Ovary	ovary
25	chr10:21654400-21658000	Weak transcription	Fetal Heart	heart
26	chr10:21654400-21658000	Weak transcription	NH-A	brain
27	chr10:21654400-21658200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:21654400-21658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:21654600-21656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:21654600-21656800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:21654600-21658000	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:21654600-21662000	Weak transcription	Left Ventricle	heart
33	chr10:21655200-21657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:21655200-21657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:21655200-21661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:21655200-21661600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:21655200-21661600	Weak transcription	NHDF-Ad	bronchial
38	chr10:21655200-21661600	Weak transcription	Osteobl	bone
39	chr10:21655800-21656800	Weak transcription	NHEK	skin
40	chr10:21655800-21657000	Weak transcription	HMEC	breast
41	chr10:21655800-21657400	Weak transcription	HUVEC	blood vessel
42	chr10:21655800-21661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:21655800-21661600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:21656000-21659000	Enhancers	Placenta	Placenta
45	chr10:21656200-21659200	Enhancers	Placenta Amnion	Placenta Amnion
46	chr10:21656400-21656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:21656400-21656800	Weak transcription	Hela-S3	cervix
48	chr10:21656400-21659400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:21656400-21659400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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