Variant report

Variant	rs16921775
Chromosome Location	chr10:21653577-21653578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21647881..21649690-chr10:21653268..21654967,2	K562	blood:
2	chr10:21652515..21654513-chr10:21784528..21786535,3	MCF-7	breast:
3	chr10:21651394..21654068-chr10:21783988..21786683,2	MCF-7	breast:
4	chr10:21653535..21655375-chr10:21660311..21663071,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230109	Chromatin interaction
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10047401	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466076	0.87[AMR][1000 genomes]
rs10466077	0.87[AMR][1000 genomes]
rs10466079	0.87[AMR][1000 genomes]
rs11012675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012678	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012682	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11012684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012685	0.87[AMR][1000 genomes]
rs12241226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242632	1.00[EUR][1000 genomes]
rs12243488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245113	1.00[EUR][1000 genomes]
rs12251668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252629	1.00[EUR][1000 genomes]
rs12254848	1.00[EUR][1000 genomes]
rs12255576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256510	1.00[EUR][1000 genomes]
rs12260172	1.00[EUR][1000 genomes]
rs12265937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268089	1.00[EUR][1000 genomes]
rs28870418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071159	0.87[AMR][1000 genomes]
rs7075558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084932	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7092377	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093106	0.87[AMR][1000 genomes]
rs7097605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73592524	1.00[EUR][1000 genomes]
rs7902413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904105	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21651000-21653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:21651000-21655800	Enhancers	HMEC	breast
3	chr10:21651200-21654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:21651400-21654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:21651800-21654400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:21651800-21654600	Enhancers	Fetal Muscle Leg	muscle
7	chr10:21651800-21655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:21652000-21653800	Enhancers	Fetal Kidney	kidney
9	chr10:21652000-21654000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:21652000-21654000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:21652000-21654000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:21652000-21654000	Enhancers	Adipose Nuclei	Adipose
13	chr10:21652000-21654000	Enhancers	Duodenum Mucosa	Duodenum
14	chr10:21652000-21654000	Enhancers	Fetal Intestine Small	intestine
15	chr10:21652000-21654000	Enhancers	NHLF	lung
16	chr10:21652000-21654200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr10:21652000-21654200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:21652000-21654200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr10:21652000-21654200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:21652000-21654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:21652000-21654200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:21652000-21654200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:21652000-21654200	Enhancers	Fetal Intestine Large	intestine
24	chr10:21652000-21654200	Enhancers	Fetal Lung	lung
25	chr10:21652000-21654400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:21652000-21654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:21652000-21654400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:21652000-21654600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:21652000-21654600	Enhancers	Osteobl	bone
30	chr10:21652000-21655200	Enhancers	NHDF-Ad	bronchial
31	chr10:21652000-21655800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:21652200-21653600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:21652200-21654200	Weak transcription	Lung	lung
34	chr10:21652200-21658000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
36	chr10:21652400-21654400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:21652400-21657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:21652600-21653600	Weak transcription	Placenta	Placenta
39	chr10:21652600-21653600	Weak transcription	Psoas Muscle	Psoas
40	chr10:21652600-21653800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:21652600-21658000	Weak transcription	Fetal Stomach	stomach
42	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:21652800-21653600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:21652800-21653600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:21652800-21653600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:21652800-21654000	Enhancers	Liver	Liver
47	chr10:21652800-21654200	Enhancers	HSMM	muscle
48	chr10:21652800-21654400	Enhancers	Fetal Heart	heart
49	chr10:21652800-21661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:21653000-21653800	Flanking Active TSS	HUVEC	blood vessel

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