Variant report

Variant	rs12245104
Chromosome Location	chr10:112886738-112886739
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11195427	0.96[ASN][1000 genomes]
rs1360862	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17128415	0.94[ASN][1000 genomes]
rs17128427	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17128431	0.94[ASN][1000 genomes]
rs870831	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12245104	ADD3	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112872600-112889200	Weak transcription	Pancreas	Pancrea
2	chr10:112878000-112887800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:112881200-112888200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:112882400-112889000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:112885400-112888800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:112886000-112889600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:112886000-112889600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:112886400-112888800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:112886400-112888800	Weak transcription	NHDF-Ad	bronchial
10	chr10:112886600-112888200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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