Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112867287..112868074-chr10:113150093..113150654,2	MCF-7	breast:
2	chr10:112854536..112855207-chr10:112867276..112868184,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10160191	0.83[EUR][1000 genomes]
rs10466194	0.84[EUR][1000 genomes]
rs10885092	0.81[EUR][1000 genomes]
rs10885095	0.84[EUR][1000 genomes]
rs10885096	0.84[EUR][1000 genomes]
rs11195427	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11195434	0.84[EUR][1000 genomes]
rs11195441	0.83[EUR][1000 genomes]
rs12245104	0.94[ASN][1000 genomes]
rs12248211	0.84[EUR][1000 genomes]
rs12262597	0.83[EUR][1000 genomes]
rs12263061	0.84[EUR][1000 genomes]
rs12267010	0.83[EUR][1000 genomes]
rs12571958	0.84[EUR][1000 genomes]
rs12573370	0.83[EUR][1000 genomes]
rs1335707	0.83[EUR][1000 genomes]
rs1360862	0.88[ASN][1000 genomes]
rs17128427	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17128431	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56321879	0.81[EUR][1000 genomes]
rs68077731	0.83[EUR][1000 genomes]
rs68106015	0.84[EUR][1000 genomes]
rs72641329	0.84[EUR][1000 genomes]
rs72641330	0.83[EUR][1000 genomes]
rs870831	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945336	0.84[EUR][1000 genomes]
rs954385	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1796336	chr10:112848721-112878724	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112860200-112868200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:112864000-112868800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:112864200-112868400	Enhancers	Pancreas	Pancrea
4	chr10:112864200-112871800	Weak transcription	Colonic Mucosa	Colon
5	chr10:112865200-112872000	Weak transcription	Fetal Intestine Small	intestine
6	chr10:112866400-112869800	Enhancers	Stomach Mucosa	stomach
7	chr10:112866800-112868400	Enhancers	Gastric	stomach
8	chr10:112867000-112868200	Enhancers	Liver	Liver
9	chr10:112867200-112869800	Enhancers	Duodenum Mucosa	Duodenum
10	chr10:112867400-112868000	Enhancers	Left Ventricle	heart
11	chr10:112867400-112868400	Weak transcription	Small Intestine	intestine

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