Variant report

Variant	rs10885096
Chromosome Location	chr10:112896109-112896110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112886782..112889479-chr10:112895290..112897533,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10159575	0.95[ASN][1000 genomes]
rs10160085	0.97[ASN][1000 genomes]
rs10160191	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10466194	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885092	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885093	0.82[ASN][1000 genomes]
rs10885095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195427	0.82[EUR][1000 genomes]
rs11195434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11195441	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12248211	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12262597	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12263061	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12267010	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571958	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573370	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335707	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17128415	0.84[EUR][1000 genomes]
rs17128427	0.85[EUR][1000 genomes]
rs17128431	0.85[EUR][1000 genomes]
rs56321879	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68077731	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68106015	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72641329	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72641330	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72641331	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs870831	0.88[EUR][1000 genomes]
rs945336	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954385	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112889800-112897400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112891200-112896200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:112891200-112896400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:112891400-112896200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:112891400-112896200	Weak transcription	Pancreas	Pancrea
6	chr10:112891400-112896800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:112891600-112896200	Weak transcription	Stomach Mucosa	stomach
8	chr10:112895200-112898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:112895200-112899400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:112895800-112896200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:112895800-112896400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:112895800-112896600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:112895800-112898400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:112895800-112898600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:112895800-112899200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:112896000-112899200	Enhancers	HUES6 Cell Line	embryonic stem cell

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