Variant report

Variant	rs10885092
Chromosome Location	chr10:112893883-112893884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10159575	0.91[ASN][1000 genomes]
rs10160085	0.93[ASN][1000 genomes]
rs10160191	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10466194	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885093	0.85[ASN][1000 genomes]
rs10885095	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885096	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11195427	0.86[EUR][1000 genomes]
rs11195432	0.82[ASN][1000 genomes]
rs11195434	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195441	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12248211	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12262597	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263061	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12267010	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12571958	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573370	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335707	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17128415	0.81[EUR][1000 genomes]
rs17128427	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17128431	0.89[EUR][1000 genomes]
rs56321879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68077731	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68106015	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72641329	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72641330	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72641331	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs870831	0.85[EUR][1000 genomes]
rs945336	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954385	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112889200-112895200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:112889800-112897400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:112890400-112895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:112890800-112895800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:112891000-112895800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:112891200-112895800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:112891200-112896200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:112891200-112896400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:112891400-112895200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:112891400-112895800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:112891400-112896200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:112891400-112896200	Weak transcription	Pancreas	Pancrea
13	chr10:112891400-112896800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:112891600-112896200	Weak transcription	Stomach Mucosa	stomach

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