Variant report

Variant	rs12262597
Chromosome Location	chr10:112905916-112905917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10159575	0.91[ASN][1000 genomes]
rs10160085	0.93[ASN][1000 genomes]
rs10160191	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10466194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885092	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885093	0.85[ASN][1000 genomes]
rs10885095	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885096	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11195427	0.84[EUR][1000 genomes]
rs11195432	0.82[ASN][1000 genomes]
rs11195434	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195441	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12248211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12263061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12267010	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12571958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573370	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335707	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17128415	0.83[EUR][1000 genomes]
rs17128427	0.86[EUR][1000 genomes]
rs17128431	0.86[EUR][1000 genomes]
rs56321879	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68077731	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68106015	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72641329	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72641330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72641331	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs870831	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs945336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954385	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112898400-112907800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112899800-112907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112903000-112907800	Weak transcription	Pancreas	Pancrea
4	chr10:112905200-112906800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:112905200-112907000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:112905400-112906400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:112905600-112906400	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:112905800-112906000	Enhancers	Spleen	Spleen
9	chr10:112905800-112906200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:112905800-112906200	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:112905800-112906400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:112905800-112906400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:112905800-112906400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:112905800-112906400	Enhancers	Brain Hippocampus Middle	brain
15	chr10:112905800-112906400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:112905800-112906600	Enhancers	Primary T cells from cord blood	blood
17	chr10:112905800-112906600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:112905800-112906600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:112905800-112906600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:112905800-112906600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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