Variant report
| Variant | rs10159575 |
|---|---|
| Chromosome Location | chr10:112912499-112912500 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10160085 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10160191 | 0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10466194 | 0.95[ASN][1000 genomes] |
| rs10885092 | 0.91[ASN][1000 genomes] |
| rs10885093 | 0.80[ASN][1000 genomes] |
| rs10885095 | 0.95[ASN][1000 genomes] |
| rs10885096 | 0.95[ASN][1000 genomes] |
| rs10885107 | 0.85[EUR][1000 genomes] |
| rs11195434 | 0.91[ASN][1000 genomes] |
| rs11195441 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12248211 | 0.94[ASN][1000 genomes] |
| rs12262597 | 0.91[ASN][1000 genomes] |
| rs12263061 | 0.94[ASN][1000 genomes] |
| rs12267010 | 0.94[ASN][1000 genomes] |
| rs12571958 | 0.95[ASN][1000 genomes] |
| rs12573370 | 0.91[ASN][1000 genomes] |
| rs1335707 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56321879 | 0.95[ASN][1000 genomes] |
| rs68077731 | 0.91[ASN][1000 genomes] |
| rs68106015 | 0.91[ASN][1000 genomes] |
| rs72641329 | 0.95[ASN][1000 genomes] |
| rs72641330 | 0.94[ASN][1000 genomes] |
| rs72641331 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs945336 | 0.95[ASN][1000 genomes] |
| rs954385 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498045 | chr10:112794518-113353550 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv467456 | chr10:112909105-112941780 | Weak transcription Enhancers Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv552173 | chr10:112909105-112941780 | Weak transcription Bivalent Enhancer Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:112911400-112912600 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr10:112912400-112918000 | Weak transcription | Placenta Amnion | Placenta Amnion |
