Variant report

Variant	rs12245143
Chromosome Location	chr10:94573235-94573236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10160103	1.00[AMR][1000 genomes]
rs11187187	1.00[AMR][1000 genomes]
rs11187230	1.00[AMR][1000 genomes]
rs11187239	1.00[AMR][1000 genomes]
rs12245568	1.00[AMR][1000 genomes]
rs12249066	1.00[AMR][1000 genomes]
rs12253892	1.00[AMR][1000 genomes]
rs12255078	1.00[AMR][1000 genomes]
rs12256603	1.00[AMR][1000 genomes]
rs12260134	1.00[AMR][1000 genomes]
rs12262000	1.00[AMR][1000 genomes]
rs12262557	1.00[AMR][1000 genomes]
rs12262584	1.00[AMR][1000 genomes]
rs12269081	1.00[AMR][1000 genomes]
rs12269377	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412374	chr10:94573086-94573550	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94571000-94574400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:94571200-94574600	Weak transcription	K562	blood
3	chr10:94572000-94575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:94572200-94574000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:94572200-94574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:94572200-94574800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:94572400-94573800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:94572400-94574000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:94572600-94573800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:94572600-94573800	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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