Variant report

Variant	rs12262584
Chromosome Location	chr10:94591992-94591993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:94591841-94592187	K562	blood:	n/a	chr10:94591918-94591929 chr10:94591918-94591929

No.	Distal block	Cell Line	Cell type
1	chr10:94351725..94353301-chr10:94589609..94592418,2	K562	blood:
2	chr10:94500581..94502660-chr10:94591143..94593258,2	K562	blood:
3	chr10:94449603..94452740-chr10:94589464..94592452,3	K562	blood:
4	chr10:94590260..94593041-chr10:94593935..94595918,2	K562	blood:

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000138190	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138160	Chromatin interaction

rs_ID	r²[population]
rs10160103	1.00[AMR][1000 genomes]
rs11187187	1.00[ASW][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187230	1.00[AMR][1000 genomes]
rs11187239	1.00[AMR][1000 genomes]
rs12245143	1.00[AMR][1000 genomes]
rs12245568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249066	1.00[AMR][1000 genomes]
rs12253892	1.00[AMR][1000 genomes]
rs12255078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256603	1.00[AMR][1000 genomes]
rs12260134	1.00[AMR][1000 genomes]
rs12262000	1.00[AMR][1000 genomes]
rs12262557	1.00[AMR][1000 genomes]
rs12269081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269377	1.00[AMR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94581600-94592800	Weak transcription	Lung	lung
2	chr10:94582800-94592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:94585600-94593000	Weak transcription	Psoas Muscle	Psoas
4	chr10:94588200-94593000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:94589000-94598000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:94589400-94592800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:94590600-94592800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:94590800-94592600	Active TSS	HUVEC	blood vessel
10	chr10:94590800-94592800	Active TSS	K562	blood
11	chr10:94591000-94593800	Weak transcription	Ovary	ovary
12	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
13	chr10:94591200-94592000	Enhancers	Primary B cells from cord blood	blood
14	chr10:94591200-94592000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:94591200-94592000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:94591200-94592000	Active TSS	Placenta	Placenta
17	chr10:94591200-94592200	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:94591200-94593000	Enhancers	Primary T cells from cord blood	blood
19	chr10:94591600-94592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:94591600-94592800	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:94591600-94593200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:94591600-94593200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:94591600-94593600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:94591600-94597000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:94591800-94592200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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