Variant report

Variant	rs12245568
Chromosome Location	chr10:94597846-94597847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94595494..94597932-chr10:94606791..94609350,3	MCF-7	breast:
2	chr10:94594344..94597237-chr10:94597831..94600212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

rs_ID	r²[population]
rs10160103	1.00[AMR][1000 genomes]
rs11187187	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187230	1.00[AMR][1000 genomes]
rs11187239	1.00[AMR][1000 genomes]
rs12245143	1.00[AMR][1000 genomes]
rs12249066	1.00[AMR][1000 genomes]
rs12253892	1.00[AMR][1000 genomes]
rs12255078	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256603	1.00[AMR][1000 genomes]
rs12260134	1.00[AMR][1000 genomes]
rs12262000	1.00[AMR][1000 genomes]
rs12262557	1.00[AMR][1000 genomes]
rs12262584	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269377	1.00[AMR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94589000-94598000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
4	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:94593400-94598600	Weak transcription	Lung	lung
8	chr10:94594000-94598000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:94594400-94598600	Weak transcription	Adipose Nuclei	Adipose
10	chr10:94594600-94599000	Weak transcription	Ovary	ovary
11	chr10:94595400-94598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:94595400-94599000	Weak transcription	Osteobl	bone
13	chr10:94595400-94599200	Weak transcription	A549	lung
14	chr10:94595600-94599000	Weak transcription	Hela-S3	cervix
15	chr10:94595600-94599000	Weak transcription	NHLF	lung
16	chr10:94596000-94598800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:94596200-94598000	Weak transcription	Psoas Muscle	Psoas
18	chr10:94596400-94598400	Genic enhancers	HUVEC	blood vessel
19	chr10:94596800-94602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
22	chr10:94597000-94599000	Genic enhancers	K562	blood
23	chr10:94597000-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:94597200-94598200	Enhancers	Dnd41	blood
25	chr10:94597200-94598600	Strong transcription	Primary T cells from cord blood	blood
26	chr10:94597200-94599200	Enhancers	Placenta	Placenta
27	chr10:94597200-94599600	Enhancers	Fetal Muscle Leg	muscle
28	chr10:94597200-94599800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:94597400-94598200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr10:94597400-94602600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:94597600-94598600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:94597600-94599000	Enhancers	HepG2	liver
33	chr10:94597800-94598000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr10:94597800-94598200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:94597800-94598200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr10:94597800-94598800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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