Variant report

Variant rs12252141
Chromosome Location chr10:589228-589229
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:582600-592600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr10:583200-592600 Weak transcription H1 Cell Line embryonic stem cell
3 chr10:583200-593000 Weak transcription NH-A brain
4 chr10:583200-604800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr10:586000-593000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr10:587200-590200 Enhancers Brain Germinal Matrix brain
7 chr10:587200-590200 Enhancers Esophagus oesophagus
8 chr10:587400-589600 Enhancers Ovary ovary
9 chr10:587400-590200 Enhancers Left Ventricle heart
10 chr10:587600-590200 Enhancers Brain Inferior Temporal Lobe brain
11 chr10:587600-590200 Enhancers Brain Substantia Nigra brain
12 chr10:587600-590600 Enhancers Fetal Brain Male brain
13 chr10:587800-590000 Enhancers Fetal Muscle Leg muscle
14 chr10:588000-590200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
15 chr10:588200-589400 Enhancers Fetal Stomach stomach
16 chr10:588200-590000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr10:588200-590400 Enhancers Brain Hippocampus Middle brain
18 chr10:588200-591200 Weak transcription Placenta Placenta
19 chr10:588200-592400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr10:588200-592400 Weak transcription Duodenum Mucosa Duodenum
21 chr10:588200-593000 Weak transcription Spleen Spleen
22 chr10:588400-589800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr10:588400-589800 Weak transcription Gastric stomach
24 chr10:588400-590000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr10:588400-590000 Weak transcription Pancreas Pancrea
26 chr10:588400-590600 Enhancers Fetal Brain Female brain
27 chr10:588400-592200 Weak transcription Fetal Intestine Large intestine
28 chr10:588400-592400 Weak transcription Stomach Mucosa stomach
29 chr10:588400-593000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr10:588400-593200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr10:588400-593200 Weak transcription Adipose Nuclei Adipose
32 chr10:588400-595200 Weak transcription Psoas Muscle Psoas
33 chr10:588600-590000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr10:588600-592400 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr10:588600-593000 Weak transcription Aorta Aorta
36 chr10:588600-593000 Weak transcription Fetal Muscle Trunk muscle
37 chr10:588600-593000 Weak transcription Lung lung
38 chr10:588800-590200 Strong transcription Fetal Intestine Small intestine
39 chr10:588800-590600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr10:588800-592400 Weak transcription Fetal Lung lung
41 chr10:588800-593000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr10:588800-593000 Weak transcription Colon Smooth Muscle Colon
43 chr10:588800-593000 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr10:589000-590200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
45 chr10:589000-590200 Enhancers Cortex derived primary cultured neurospheres brain
46 chr10:589000-592400 Weak transcription Stomach Smooth Muscle stomach
47 chr10:589200-589400 Enhancers Brain Angular Gyrus brain
48 chr10:589200-589400 Enhancers Brain Anterior Caudate brain
49 chr10:589200-589400 Enhancers Brain Cingulate Gyrus brain
50 chr10:589200-589400 Enhancers Brain Dorsolateral Prefrontal Cortex brain

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