Variant report

Variant rs11252809
Chromosome Location chr10:545945-545946
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:532000-557000 Weak transcription Pancreas Pancrea
2 chr10:537200-549400 Weak transcription Esophagus oesophagus
3 chr10:537200-551400 Weak transcription Spleen Spleen
4 chr10:537600-547800 Enhancers Rectal Smooth Muscle rectum
5 chr10:537600-556600 Weak transcription HSMM muscle
6 chr10:538000-546400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr10:538000-552600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr10:539200-546600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr10:539400-546200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr10:539800-552800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr10:540000-556400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr10:540800-548000 Weak transcription HSMMtube muscle
13 chr10:541000-546000 Weak transcription Psoas Muscle Psoas
14 chr10:542000-546400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr10:543000-548000 Enhancers Colon Smooth Muscle Colon
16 chr10:543200-546200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
17 chr10:543200-546400 Enhancers Brain Inferior Temporal Lobe brain
18 chr10:543400-546200 Enhancers Left Ventricle heart
19 chr10:543400-547200 Enhancers Brain Angular Gyrus brain
20 chr10:543400-547600 Enhancers Brain Hippocampus Middle brain
21 chr10:543600-546200 Enhancers Fetal Brain Male brain
22 chr10:543600-552000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr10:543800-546200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr10:543800-546400 Enhancers Right Ventricle heart
25 chr10:543800-547400 Enhancers Brain Cingulate Gyrus brain
26 chr10:543800-548000 Enhancers Brain Anterior Caudate brain
27 chr10:544000-546400 Enhancers Right Atrium heart
28 chr10:544200-547200 Enhancers Brain Substantia Nigra brain
29 chr10:544200-547200 Enhancers Fetal Brain Female brain
30 chr10:544200-547600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr10:544200-547800 Enhancers Cortex derived primary cultured neurospheres brain
32 chr10:544400-546200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr10:544400-546600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr10:544400-547800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr10:544400-548200 Enhancers Breast Myoepithelial Primary Cells Breast
36 chr10:544600-546000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
37 chr10:544600-546000 Weak transcription Adipose Nuclei Adipose
38 chr10:544600-546000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr10:544600-546200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
40 chr10:544600-546400 Enhancers H1 Cell Line embryonic stem cell
41 chr10:544600-547600 Enhancers Fetal Heart heart
42 chr10:544600-556800 Weak transcription Placenta Placenta
43 chr10:544800-546800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr10:544800-547800 Enhancers Skeletal Muscle Female skeletal muscle
45 chr10:544800-548200 Enhancers Primary hematopoietic stem cells blood
46 chr10:545000-546200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
47 chr10:545000-547000 Enhancers Brain Germinal Matrix brain
48 chr10:545000-547200 Enhancers Fetal Lung lung
49 chr10:545000-548800 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr10:545200-546200 Enhancers Fetal Stomach stomach

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