Variant report

Variant rs885593
Chromosome Location chr10:540161-540162
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:531400-545800 Weak transcription Gastric stomach
2 chr10:531600-540400 Enhancers Brain Substantia Nigra brain
3 chr10:532000-544400 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr10:532000-557000 Weak transcription Pancreas Pancrea
5 chr10:532600-540400 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr10:532800-543200 Weak transcription Fetal Intestine Small intestine
7 chr10:534400-540400 Enhancers Fetal Muscle Trunk muscle
8 chr10:534600-541200 Enhancers Brain Angular Gyrus brain
9 chr10:534600-541400 Enhancers Brain Inferior Temporal Lobe brain
10 chr10:535000-541200 Enhancers Fetal Muscle Leg muscle
11 chr10:536000-541000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr10:536000-542000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
13 chr10:536200-540800 Enhancers Fetal Stomach stomach
14 chr10:536200-541800 Enhancers Fetal Brain Male brain
15 chr10:536800-541000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
16 chr10:536800-541000 Enhancers Psoas Muscle Psoas
17 chr10:537000-540200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr10:537000-540600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr10:537000-541800 Enhancers Cortex derived primary cultured neurospheres brain
20 chr10:537000-541800 Enhancers Fetal Brain Female brain
21 chr10:537200-549400 Weak transcription Esophagus oesophagus
22 chr10:537200-551400 Weak transcription Spleen Spleen
23 chr10:537400-541000 Enhancers Skeletal Muscle Male skeletal muscle
24 chr10:537400-541800 Enhancers Brain Cingulate Gyrus brain
25 chr10:537400-545800 Weak transcription Fetal Intestine Large intestine
26 chr10:537600-541200 Enhancers Skeletal Muscle Female skeletal muscle
27 chr10:537600-541800 Enhancers Brain Anterior Caudate brain
28 chr10:537600-541800 Enhancers Brain Hippocampus Middle brain
29 chr10:537600-544600 Weak transcription NH-A brain
30 chr10:537600-547800 Enhancers Rectal Smooth Muscle rectum
31 chr10:537600-556600 Weak transcription HSMM muscle
32 chr10:537800-544600 Weak transcription Fetal Heart heart
33 chr10:538000-546400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr10:538000-552600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr10:538200-540600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
36 chr10:538400-543200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr10:538400-543400 Weak transcription Ovary ovary
38 chr10:538400-544200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr10:538400-545000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr10:538600-541000 Enhancers HepG2 liver
41 chr10:538800-544200 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr10:538800-544600 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr10:539200-540800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr10:539200-541800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
45 chr10:539200-541800 Enhancers Brain Germinal Matrix brain
46 chr10:539200-546600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr10:539400-540800 Enhancers Right Atrium heart
48 chr10:539400-540800 Enhancers Right Ventricle heart
49 chr10:539400-543400 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr10:539400-544600 Weak transcription iPS-18 Cell Line embryonic stem cell

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