Variant report

Variant	rs12253590
Chromosome Location	chr10:116916664-116916665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10885653	1.00[AMR][1000 genomes]
rs11197059	1.00[AMR][1000 genomes]
rs11197069	1.00[AMR][1000 genomes]
rs11197073	1.00[YRI][hapmap]
rs11197076	1.00[AMR][1000 genomes]
rs11197078	1.00[AMR][1000 genomes]
rs11197100	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197101	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197105	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197125	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197136	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197152	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11197161	1.00[YRI][hapmap]
rs11197169	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11197179	1.00[AMR][1000 genomes]
rs11812618	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11813673	1.00[AMR][1000 genomes]
rs11815135	1.00[AMR][1000 genomes]
rs11817487	1.00[AMR][1000 genomes]
rs12241197	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243763	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12244029	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244820	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247960	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12248148	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12248853	1.00[YRI][hapmap]
rs12251597	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259440	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259840	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260295	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264766	0.85[YRI][hapmap]
rs12266411	1.00[AMR][1000 genomes]
rs12267093	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116912000-116925600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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