Variant report

Variant	rs12244820
Chromosome Location	chr10:116969404-116969405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10218965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10885653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197059	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197073	1.00[YRI][hapmap]
rs11197076	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197101	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197105	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197125	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197136	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197152	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197161	1.00[YRI][hapmap]
rs11197169	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197202	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11812618	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11815135	1.00[AMR][1000 genomes]
rs11817487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241197	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243763	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244029	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247960	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248148	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248853	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12251597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253590	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259440	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259840	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260269	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260295	0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264766	0.87[YRI][hapmap]
rs12266411	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267093	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116967000-116980400	Weak transcription	Fetal Kidney	kidney
2	chr10:116968400-116980600	Weak transcription	Aorta	Aorta
3	chr10:116969200-116969600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr10:116969400-116969600	Enhancers	Colon Smooth Muscle	Colon

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