Variant report

Variant	rs12247960
Chromosome Location	chr10:117093554-117093555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117092138..117094480-chr10:117108879..117111513,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10160059	1.00[AMR][1000 genomes]
rs10218965	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10885653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197069	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197076	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197078	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197100	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197101	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197105	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197125	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197136	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197152	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197161	1.00[YRI][hapmap]
rs11197169	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197202	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197215	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197221	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197226	1.00[AMR][1000 genomes]
rs11197245	1.00[AMR][1000 genomes]
rs11197262	1.00[AMR][1000 genomes]
rs11197263	1.00[AMR][1000 genomes]
rs11812618	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11815135	1.00[AMR][1000 genomes]
rs11817487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241197	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244029	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244820	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248148	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248853	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12251569	1.00[AMR][1000 genomes]
rs12251597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253590	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12256874	1.00[AMR][1000 genomes]
rs12259439	1.00[YRI][hapmap]
rs12259440	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259840	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260295	0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264087	1.00[AMR][1000 genomes]
rs12266411	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1856358	0.91[AFR][1000 genomes]
rs56119142	1.00[AMR][1000 genomes]
rs74158363	1.00[AMR][1000 genomes]
rs7921138	1.00[AMR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117091800-117103600	Weak transcription	Aorta	Aorta

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