Variant report
| Variant | rs10160059 |
|---|---|
| Chromosome Location | chr10:117259640-117259641 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10218965 | 1.00[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs11197152 | 1.00[AMR][1000 genomes] |
| rs11197169 | 1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[AMR][1000 genomes] |
| rs11197179 | 1.00[AMR][1000 genomes] |
| rs11197202 | 1.00[AMR][1000 genomes] |
| rs11197215 | 1.00[AMR][1000 genomes] |
| rs11197226 | 0.90[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197245 | 0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11197251 | 0.90[YRI][hapmap] |
| rs11197262 | 0.90[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197263 | 1.00[AMR][1000 genomes] |
| rs11814391 | 1.00[AMR][1000 genomes] |
| rs11814707 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11815135 | 1.00[AMR][1000 genomes] |
| rs11815570 | 1.00[AMR][1000 genomes] |
| rs11819600 | 1.00[AMR][1000 genomes] |
| rs12245250 | 0.90[YRI][hapmap] |
| rs12245494 | 0.90[YRI][hapmap] |
| rs12247872 | 0.89[YRI][hapmap] |
| rs12247960 | 1.00[AMR][1000 genomes] |
| rs12248297 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12251569 | 0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12253441 | 1.00[AMR][1000 genomes] |
| rs12255338 | 1.00[AMR][1000 genomes] |
| rs12256874 | 0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12258177 | 1.00[AMR][1000 genomes] |
| rs12260269 | 1.00[AMR][1000 genomes] |
| rs12264087 | 1.00[AMR][1000 genomes] |
| rs12266411 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12267100 | 0.80[YRI][hapmap] |
| rs12269265 | 1.00[AMR][1000 genomes] |
| rs12269430 | 0.88[YRI][hapmap] |
| rs1494172 | 1.00[ASW][hapmap];0.83[MKK][hapmap] |
| rs56119142 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74158241 | 1.00[AMR][1000 genomes] |
| rs74158363 | 1.00[AMR][1000 genomes] |
| rs7921138 | 0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117259400-117259800 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
