Variant report
| Variant | rs12258177 |
|---|---|
| Chromosome Location | chr10:117335023-117335024 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151892 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs10160059 | 1.00[AMR][1000 genomes] |
| rs10218965 | 1.00[AMR][1000 genomes] |
| rs11197202 | 1.00[AMR][1000 genomes] |
| rs11197215 | 1.00[AMR][1000 genomes] |
| rs11197226 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197245 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197251 | 0.80[YRI][hapmap] |
| rs11197262 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197263 | 1.00[AMR][1000 genomes] |
| rs11197425 | 1.00[AMR][1000 genomes] |
| rs11814391 | 1.00[AMR][1000 genomes] |
| rs11814707 | 1.00[AMR][1000 genomes] |
| rs11815570 | 1.00[AMR][1000 genomes] |
| rs11819600 | 1.00[AMR][1000 genomes] |
| rs12242852 | 1.00[AMR][1000 genomes] |
| rs12244147 | 1.00[AMR][1000 genomes] |
| rs12245250 | 0.80[YRI][hapmap] |
| rs12245494 | 0.80[YRI][hapmap] |
| rs12248297 | 1.00[AMR][1000 genomes] |
| rs12251569 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12251850 | 1.00[AMR][1000 genomes] |
| rs12251879 | 1.00[AMR][1000 genomes] |
| rs12253441 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12254795 | 1.00[YRI][hapmap] |
| rs12255338 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12256874 | 1.00[AMR][1000 genomes] |
| rs12260269 | 1.00[AMR][1000 genomes] |
| rs12260832 | 1.00[YRI][hapmap] |
| rs12262485 | 1.00[AMR][1000 genomes] |
| rs12262493 | 1.00[AMR][1000 genomes] |
| rs12264087 | 1.00[AMR][1000 genomes] |
| rs12264131 | 1.00[YRI][hapmap] |
| rs12266411 | 1.00[AMR][1000 genomes] |
| rs12269265 | 0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56119142 | 1.00[AMR][1000 genomes] |
| rs7070325 | 1.00[AMR][1000 genomes] |
| rs7080508 | 1.00[AMR][1000 genomes] |
| rs7087764 | 1.00[YRI][hapmap] |
| rs7095980 | 1.00[AMR][1000 genomes] |
| rs7099966 | 1.00[AMR][1000 genomes] |
| rs74158241 | 1.00[AMR][1000 genomes] |
| rs74158274 | 1.00[AMR][1000 genomes] |
| rs74158363 | 1.00[AMR][1000 genomes] |
| rs7921138 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117327800-117357200 | Weak transcription | Aorta | Aorta |
| 2 | chr10:117334800-117335200 | Active TSS | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 3 | chr10:117335000-117335200 | Active TSS | Pancreatic Islets | Pancreatic Islet |
