Variant report
| Variant | rs12255338 |
|---|---|
| Chromosome Location | chr10:117315811-117315812 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:117315687..117317924-chr10:118030719..118033339,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151892 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10160059 | 1.00[AMR][1000 genomes] |
| rs10218965 | 1.00[AMR][1000 genomes] |
| rs11197179 | 1.00[AMR][1000 genomes] |
| rs11197202 | 1.00[AMR][1000 genomes] |
| rs11197215 | 1.00[AMR][1000 genomes] |
| rs11197226 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197245 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197251 | 0.82[YRI][hapmap] |
| rs11197262 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11197263 | 1.00[AMR][1000 genomes] |
| rs11197425 | 1.00[AMR][1000 genomes] |
| rs11814391 | 1.00[AMR][1000 genomes] |
| rs11814707 | 1.00[AMR][1000 genomes] |
| rs11815570 | 1.00[AMR][1000 genomes] |
| rs11819600 | 1.00[AMR][1000 genomes] |
| rs12242852 | 1.00[AMR][1000 genomes] |
| rs12245250 | 0.82[YRI][hapmap] |
| rs12245494 | 0.82[YRI][hapmap] |
| rs12247872 | 0.80[YRI][hapmap] |
| rs12248297 | 1.00[AMR][1000 genomes] |
| rs12251569 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12253441 | 1.00[AMR][1000 genomes] |
| rs12254795 | 1.00[YRI][hapmap] |
| rs12256874 | 1.00[AMR][1000 genomes] |
| rs12258177 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12260269 | 1.00[AMR][1000 genomes] |
| rs12260832 | 1.00[YRI][hapmap] |
| rs12264087 | 1.00[AMR][1000 genomes] |
| rs12264131 | 1.00[YRI][hapmap] |
| rs12266411 | 1.00[AMR][1000 genomes] |
| rs12269265 | 0.83[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56119142 | 1.00[AMR][1000 genomes] |
| rs7080508 | 1.00[AMR][1000 genomes] |
| rs7087764 | 1.00[YRI][hapmap] |
| rs7095980 | 1.00[AMR][1000 genomes] |
| rs74158241 | 1.00[AMR][1000 genomes] |
| rs74158274 | 1.00[AMR][1000 genomes] |
| rs74158363 | 1.00[AMR][1000 genomes] |
| rs7921138 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
