Variant report

Variant	rs12264766
Chromosome Location	chr10:116888888-116888889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10885653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197073	0.87[YRI][hapmap]
rs11197076	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197100	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197101	0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197105	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197125	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197136	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197152	0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197161	0.87[YRI][hapmap]
rs11197169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197179	1.00[AMR][1000 genomes]
rs11812618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11813673	1.00[AMR][1000 genomes]
rs11815135	1.00[AMR][1000 genomes]
rs11817487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241197	0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243763	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244029	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244820	0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248148	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248853	0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs12251597	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253590	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12259440	1.00[ASW][hapmap];0.88[LWK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259840	0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260295	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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