Variant report

Variant	rs12253950
Chromosome Location	chr10:112820506-112820507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112810110..112812207-chr10:112819459..112821459,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11195384	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs11195386	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs11195389	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs11195392	0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs11195393	0.89[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12244153	0.84[ASN][1000 genomes]
rs12245003	0.84[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12248431	0.84[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12248739	0.86[ASW][hapmap];0.84[CHD][hapmap];1.00[TSI][hapmap]
rs12249521	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12258923	0.86[ASW][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap]
rs1327552	0.86[ASW][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs13306146	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1410052	0.86[ASW][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs17128102	0.86[ASW][hapmap];0.82[CHD][hapmap];1.00[TSI][hapmap]
rs17128270	0.84[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1800038	1.00[ASW][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4917593	0.86[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs4918610	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4918620	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918622	0.82[AMR][1000 genomes]
rs55879225	0.86[ASN][1000 genomes]
rs56005122	0.84[ASN][1000 genomes]
rs72819772	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9804245	0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112818800-112821000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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