Variant report

Variant	rs4918620
Chromosome Location	chr10:112813664-112813665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11195378	0.82[ASN][1000 genomes]
rs11195384	1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11195386	1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs11195389	1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11195392	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs11195393	1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11195402	0.82[AFR][1000 genomes]
rs12241684	0.85[AFR][1000 genomes]
rs12244153	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12245003	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12248431	1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12248632	0.82[ASN][1000 genomes]
rs12249521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12253950	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12256152	0.82[ASN][1000 genomes]
rs12264063	0.86[AFR][1000 genomes]
rs12266042	0.85[ASN][1000 genomes]
rs12267661	0.81[ASN][1000 genomes]
rs12268160	0.82[ASN][1000 genomes]
rs12268606	0.82[ASN][1000 genomes]
rs1327552	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13306146	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1410052	1.00[YRI][hapmap]
rs17128099	1.00[YRI][hapmap]
rs17128270	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17128355	0.94[AFR][1000 genomes]
rs1800038	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3750621	0.82[ASN][1000 genomes]
rs3750622	0.82[ASN][1000 genomes]
rs4917593	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4918610	1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs4918622	0.86[AFR][1000 genomes]
rs55879225	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56005122	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56302131	0.83[ASN][1000 genomes]
rs56350255	0.83[ASN][1000 genomes]
rs59265487	0.86[AFR][1000 genomes]
rs72819772	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9804245	1.00[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112813200-112817000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links