Variant report

Variant	rs4918622
Chromosome Location	chr10:112847342-112847343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11195384	1.00[YRI][hapmap]
rs11195386	1.00[YRI][hapmap]
rs11195389	1.00[YRI][hapmap]
rs11195392	0.87[YRI][hapmap]
rs11195393	1.00[YRI][hapmap]
rs11195421	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12241684	0.94[AFR][1000 genomes]
rs12242885	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12245003	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs12247360	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12248431	1.00[YRI][hapmap]
rs12249521	0.83[AFR][1000 genomes]
rs12253950	0.82[AMR][1000 genomes]
rs12257528	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12259584	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12264063	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1327552	0.88[YRI][hapmap]
rs13306146	0.86[AMR][1000 genomes]
rs1410052	1.00[YRI][hapmap]
rs17128270	1.00[YRI][hapmap]
rs17128355	0.86[AFR][1000 genomes]
rs1800038	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4378315	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs488003	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4917593	0.88[YRI][hapmap]
rs4918610	1.00[YRI][hapmap]
rs4918620	0.86[AFR][1000 genomes]
rs4918621	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918624	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57258802	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59265487	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60227073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60285632	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60899455	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs670082	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905110	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7918801	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9804245	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112839400-112848800	Weak transcription	Right Atrium	heart
2	chr10:112843800-112859400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112845400-112861400	Weak transcription	Pancreas	Pancrea
4	chr10:112846000-112852200	Weak transcription	Ovary	ovary
5	chr10:112847000-112847400	Enhancers	Gastric	stomach
6	chr10:112847000-112847400	Enhancers	K562	blood
7	chr10:112847200-112849800	Weak transcription	Stomach Mucosa	stomach

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