Variant report

Variant	rs13306146
Chromosome Location	chr10:112840171-112840172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11195384	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs11195386	1.00[JPT][hapmap]
rs11195389	1.00[JPT][hapmap]
rs11195392	0.93[JPT][hapmap]
rs11195393	0.84[JPT][hapmap]
rs12245003	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12248431	0.94[JPT][hapmap]
rs12248739	0.86[ASW][hapmap];1.00[TSI][hapmap]
rs12249521	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12253950	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12264063	0.84[AMR][1000 genomes]
rs1327552	0.86[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs1410052	0.86[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17128270	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1800038	1.00[ASW][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4917593	0.86[ASW][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs4918610	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4918620	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4918622	0.86[AMR][1000 genomes]
rs59265487	0.84[AMR][1000 genomes]
rs72819772	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9804245	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321787	chr10:112835962-112840760	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3377744	chr10:112837487-112840335	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835800-112840400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr10:112838400-112840400	Bivalent Enhancer	Fetal Stomach	stomach
3	chr10:112838400-112847200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:112838800-112840200	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr10:112839000-112840200	Flanking Active TSS	Ovary	ovary
6	chr10:112839200-112840200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:112839400-112840200	Active TSS	Duodenum Mucosa	Duodenum
8	chr10:112839400-112840200	Bivalent Enhancer	Fetal Intestine Small	intestine
9	chr10:112839400-112840400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:112839400-112840400	Bivalent Enhancer	Fetal Lung	lung
11	chr10:112839400-112843400	Weak transcription	Spleen	Spleen
12	chr10:112839400-112848800	Weak transcription	Right Atrium	heart
13	chr10:112839600-112840200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
14	chr10:112839600-112842200	Enhancers	Stomach Mucosa	stomach
15	chr10:112839800-112842000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:112840000-112840200	Enhancers	Fetal Brain Male	brain
17	chr10:112840000-112840200	Flanking Active TSS	Pancreas	Pancrea
18	chr10:112840000-112840400	Transcr. at gene 5' and 3'	Fetal Brain Female	brain

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