Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11195384	0.88[YRI][hapmap]
rs11195386	0.88[YRI][hapmap]
rs11195389	0.88[YRI][hapmap]
rs11195393	0.88[YRI][hapmap]
rs11195402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241684	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244153	0.81[AFR][1000 genomes]
rs12244273	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245003	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs12248431	0.88[YRI][hapmap]
rs12248739	0.88[YRI][hapmap]
rs12249521	0.91[AFR][1000 genomes]
rs12249906	0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252103	1.00[AMR][1000 genomes]
rs12263197	1.00[AMR][1000 genomes]
rs12264063	0.86[AFR][1000 genomes]
rs1327552	0.81[AFR][1000 genomes]
rs13306146	0.88[YRI][hapmap]
rs1410052	0.88[YRI][hapmap]
rs17128099	0.88[YRI][hapmap]
rs17128102	1.00[YRI][hapmap]
rs17128270	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs1800038	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4917593	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4918610	0.88[YRI][hapmap]
rs4918620	0.94[AFR][1000 genomes]
rs4918622	0.86[AFR][1000 genomes]
rs56005122	0.81[AFR][1000 genomes]
rs59265487	0.86[AFR][1000 genomes]
rs9804245	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112829800-112835600	Weak transcription	Pancreas	Pancrea

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