Variant report

Variant	rs12258157
Chromosome Location	chr10:26758334-26758335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12240993	1.00[EUR][1000 genomes]
rs2770193	1.00[EUR][1000 genomes]
rs56766064	1.00[EUR][1000 genomes]
rs59237400	1.00[EUR][1000 genomes]
rs702989	1.00[EUR][1000 genomes]
rs702993	1.00[EUR][1000 genomes]
rs702994	1.00[EUR][1000 genomes]
rs702995	1.00[EUR][1000 genomes]
rs702998	1.00[EUR][1000 genomes]
rs7096418	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26746400-26763200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26750000-26759800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:26751800-26759600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr10:26751800-26763800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:26752200-26759600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:26752600-26760400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:26753400-26758800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26754400-26761800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:26754800-26759000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:26755600-26763200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:26756400-26762000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:26756600-26760000	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:26756600-26768000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:26756800-26758800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:26757000-26758400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:26757400-26758400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr10:26757800-26758400	Active TSS	Thymus	Thymus
18	chr10:26757800-26759800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:26757800-26768800	Weak transcription	Liver	Liver
20	chr10:26758000-26758400	Enhancers	Primary B cells from cord blood	blood
21	chr10:26758000-26758400	Enhancers	Fetal Thymus	thymus
22	chr10:26758000-26758600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:26758000-26758600	Enhancers	Dnd41	blood
24	chr10:26758000-26758800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:26758000-26759000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:26758000-26759000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:26758000-26759600	Weak transcription	Spleen	Spleen
28	chr10:26758000-26759800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:26758000-26761400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr10:26758000-26762600	Enhancers	Primary T cells from cord blood	blood
31	chr10:26758000-26762800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:26758000-26763000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr10:26758000-26764600	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr10:26758000-26768600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:26758000-26768800	Weak transcription	Pancreas	Pancrea
36	chr10:26758000-26769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:26758000-26771800	Weak transcription	A549	lung
38	chr10:26758200-26759600	Genic enhancers	GM12878-XiMat	blood
39	chr10:26758200-26762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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