Variant report

Variant	rs702989
Chromosome Location	chr10:26773887-26773888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26764462..26766548-chr10:26772607..26774212,2	K562	blood:
2	chr10:26772817..26775634-chr10:26777086..26779692,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12240993	1.00[EUR][1000 genomes]
rs12258157	1.00[EUR][1000 genomes]
rs1775245	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2244955	0.92[AMR][1000 genomes]
rs2484425	0.92[AMR][1000 genomes]
rs2770193	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56766064	1.00[EUR][1000 genomes]
rs59237400	1.00[EUR][1000 genomes]
rs697158	0.92[AMR][1000 genomes]
rs697159	0.92[AMR][1000 genomes]
rs702990	0.92[AMR][1000 genomes]
rs702991	0.92[AMR][1000 genomes]
rs702992	0.92[AMR][1000 genomes]
rs702993	1.00[EUR][1000 genomes]
rs702994	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs702995	0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702998	1.00[EUR][1000 genomes]
rs7096418	1.00[EUR][1000 genomes]
rs786715	0.92[AMR][1000 genomes]
rs786716	0.92[AMR][1000 genomes]
rs786718	0.92[AMR][1000 genomes]
rs805022	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26769200-26774000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26769200-26774800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:26769400-26776200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:26769400-26776200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
7	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
8	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:26770200-26775400	Weak transcription	Liver	Liver
12	chr10:26770600-26774000	Weak transcription	Small Intestine	intestine
13	chr10:26771400-26775200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:26771600-26775400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:26771600-26776200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:26771600-26776200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:26771600-26776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:26771600-26776800	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:26771600-26777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:26771600-26778400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:26771800-26775400	Enhancers	Primary B cells from cord blood	blood
22	chr10:26771800-26775400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr10:26771800-26775800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:26771800-26777400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:26771800-26777600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr10:26772400-26775000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:26772400-26775800	Enhancers	Primary T cells from cord blood	blood
28	chr10:26772400-26779600	Genic enhancers	Fetal Thymus	thymus
29	chr10:26772600-26774000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr10:26772600-26774000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:26772600-26774000	Weak transcription	Osteobl	bone
32	chr10:26772600-26775000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:26772600-26775400	Enhancers	GM12878-XiMat	blood
34	chr10:26772800-26774000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:26772800-26774000	Weak transcription	NH-A	brain
36	chr10:26773000-26774000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:26773000-26774000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:26773000-26774000	Weak transcription	Thymus	Thymus
39	chr10:26773000-26774200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:26773000-26775400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr10:26773200-26774000	Weak transcription	Dnd41	blood
42	chr10:26773200-26775000	Enhancers	Hela-S3	cervix
43	chr10:26773400-26774000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr10:26773600-26775200	Enhancers	A549	lung
45	chr10:26773800-26774000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:26773800-26775400	Enhancers	Adipose Nuclei	Adipose
47	chr10:26773800-26775400	Enhancers	Fetal Heart	heart
48	chr10:26773800-26776600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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