Variant report

Variant	rs59237400
Chromosome Location	chr10:26754928-26754929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12240993	1.00[EUR][1000 genomes]
rs12258157	1.00[EUR][1000 genomes]
rs2770193	1.00[EUR][1000 genomes]
rs56766064	1.00[EUR][1000 genomes]
rs702989	1.00[EUR][1000 genomes]
rs702993	1.00[EUR][1000 genomes]
rs702994	1.00[EUR][1000 genomes]
rs702995	1.00[EUR][1000 genomes]
rs702998	1.00[EUR][1000 genomes]
rs7096418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26739000-26757000	Weak transcription	Liver	Liver
3	chr10:26745400-26757400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:26746200-26757400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:26746400-26763200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:26746600-26756000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:26748600-26757400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:26750000-26757600	Weak transcription	Spleen	Spleen
9	chr10:26750000-26759800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:26750800-26755200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:26750800-26757600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:26751200-26756200	Genic enhancers	Dnd41	blood
13	chr10:26751600-26755200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:26751600-26755600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:26751800-26755200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:26751800-26756600	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr10:26751800-26757400	Genic enhancers	Fetal Thymus	thymus
18	chr10:26751800-26759600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:26751800-26763800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:26752200-26759600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:26752600-26760400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:26752800-26755000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:26753400-26756800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:26753400-26756800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:26753400-26758800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr10:26753800-26756400	Genic enhancers	GM12878-XiMat	blood
27	chr10:26754200-26755200	Strong transcription	Primary B cells from cord blood	blood
28	chr10:26754400-26761800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:26754600-26755600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:26754600-26755800	Genic enhancers	Thymus	Thymus
31	chr10:26754600-26756600	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr10:26754800-26755600	Genic enhancers	Primary T cells from cord blood	blood
33	chr10:26754800-26755600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:26754800-26755800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:26754800-26755800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:26754800-26759000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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