Variant report

Variant	rs702998
Chromosome Location	chr10:26762548-26762549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12240993	1.00[EUR][1000 genomes]
rs12258157	1.00[EUR][1000 genomes]
rs16927056	1.00[TSI][hapmap]
rs2770193	1.00[EUR][1000 genomes]
rs56766064	1.00[EUR][1000 genomes]
rs59237400	1.00[EUR][1000 genomes]
rs702989	1.00[EUR][1000 genomes]
rs702993	1.00[EUR][1000 genomes]
rs702994	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702995	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7096418	1.00[EUR][1000 genomes]
rs786715	0.89[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26746400-26763200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26751800-26763800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:26755600-26763200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:26756600-26768000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr10:26757800-26768800	Weak transcription	Liver	Liver
6	chr10:26758000-26762600	Enhancers	Primary T cells from cord blood	blood
7	chr10:26758000-26762800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:26758000-26763000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:26758000-26764600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:26758000-26768600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:26758000-26768800	Weak transcription	Pancreas	Pancrea
12	chr10:26758000-26769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:26758000-26771800	Weak transcription	A549	lung
14	chr10:26758200-26762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:26758400-26762600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:26758400-26766000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:26758400-26766600	Genic enhancers	Fetal Thymus	thymus
18	chr10:26759000-26764400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr10:26759800-26764600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:26760000-26763800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:26760000-26768800	Weak transcription	Spleen	Spleen
22	chr10:26760200-26763200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:26760200-26763800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr10:26760800-26763600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:26761200-26763200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:26761200-26769000	Weak transcription	Lung	lung
27	chr10:26761400-26762600	Weak transcription	Adipose Nuclei	Adipose
28	chr10:26761400-26764800	Genic enhancers	GM12878-XiMat	blood
29	chr10:26761400-26767800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:26761600-26763400	Weak transcription	NHDF-Ad	bronchial
31	chr10:26761600-26765400	Enhancers	Dnd41	blood
32	chr10:26761800-26762600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:26761800-26763000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:26761800-26764000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr10:26762000-26762600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:26762000-26762600	Weak transcription	Primary B cells from cord blood	blood
37	chr10:26762000-26762600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:26762000-26762600	Enhancers	Brain Germinal Matrix	brain
39	chr10:26762000-26763000	Enhancers	Thymus	Thymus
40	chr10:26762000-26763200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr10:26762000-26764600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr10:26762200-26762600	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr10:26762200-26763200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:26762200-26764000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:26762200-26765000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:26762400-26763200	Enhancers	Duodenum Mucosa	Duodenum
47	chr10:26762400-26764000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:26762400-26764000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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