Variant report

Variant	rs702992
Chromosome Location	chr10:26766940-26766941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2244955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2479882	0.85[AFR][1000 genomes]
rs2484425	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697158	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702989	0.92[AMR][1000 genomes]
rs702990	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702991	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702995	0.84[AMR][1000 genomes]
rs786715	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs786716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs786718	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs805022	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26756600-26768000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr10:26757800-26768800	Weak transcription	Liver	Liver
3	chr10:26758000-26768600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:26758000-26768800	Weak transcription	Pancreas	Pancrea
5	chr10:26758000-26769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:26758000-26771800	Weak transcription	A549	lung
7	chr10:26760000-26768800	Weak transcription	Spleen	Spleen
8	chr10:26761200-26769000	Weak transcription	Lung	lung
9	chr10:26761400-26767800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:26763200-26768800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:26764000-26767000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:26764000-26768600	Weak transcription	Adipose Nuclei	Adipose
13	chr10:26764000-26769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:26764000-26772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:26764400-26768800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:26764600-26767000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:26764600-26767000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:26764600-26768400	Enhancers	Primary T cells from cord blood	blood
19	chr10:26764600-26769000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:26764800-26768800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:26765000-26768800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:26766000-26767000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:26766000-26767200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:26766000-26767800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:26766000-26767800	Flanking Active TSS	Thymus	Thymus
26	chr10:26766200-26767000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:26766200-26767200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:26766400-26767200	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr10:26766400-26767400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:26766400-26767800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:26766400-26768400	Enhancers	Primary B cells from cord blood	blood
32	chr10:26766400-26768800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:26766400-26768800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:26766600-26767000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:26766600-26767200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
36	chr10:26766600-26767400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:26766600-26768400	Enhancers	Primary hematopoietic stem cells	blood
38	chr10:26766600-26768800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr10:26766800-26767200	Genic enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:26766800-26767600	Flanking Active TSS	Dnd41	blood
41	chr10:26766800-26768600	Enhancers	GM12878-XiMat	blood
42	chr10:26766800-26768600	Enhancers	Monocytes-CD14+_RO01746	blood

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