Variant report

Variant	rs2244955
Chromosome Location	chr10:26769632-26769633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2479882	0.91[AFR][1000 genomes]
rs2484425	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697159	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702989	0.92[AMR][1000 genomes]
rs702990	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702991	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702995	0.84[AMR][1000 genomes]
rs786715	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs786716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs786718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs805022	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26758000-26771800	Weak transcription	A549	lung
2	chr10:26764000-26769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:26764000-26772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:26767200-26772400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:26768400-26771800	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr10:26768600-26770600	Enhancers	Adipose Nuclei	Adipose
8	chr10:26768600-26771800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:26768600-26771800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr10:26768800-26771000	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:26768800-26771000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:26768800-26771800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr10:26769000-26770200	Enhancers	Primary T cells from cord blood	blood
14	chr10:26769200-26769800	Weak transcription	Esophagus	oesophagus
15	chr10:26769200-26770200	Enhancers	Liver	Liver
16	chr10:26769200-26770600	Enhancers	Small Intestine	intestine
17	chr10:26769200-26771000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:26769200-26774000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:26769200-26774800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:26769400-26769800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr10:26769400-26769800	Weak transcription	Lung	lung
22	chr10:26769400-26770000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:26769400-26770000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:26769400-26770000	Genic enhancers	Fetal Thymus	thymus
25	chr10:26769400-26770200	Enhancers	Dnd41	blood
26	chr10:26769400-26771000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:26769400-26771000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr10:26769400-26771000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:26769400-26771000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:26769400-26773000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:26769400-26776200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr10:26769400-26776200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
34	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
35	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:26769600-26769800	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr10:26769600-26769800	Flanking Active TSS	Thymus	Thymus
40	chr10:26769600-26770000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:26769600-26770000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr10:26769600-26770000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:26769600-26770000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:26769600-26770000	Weak transcription	Colonic Mucosa	Colon
45	chr10:26769600-26771600	Flanking Active TSS	GM12878-XiMat	blood

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