Variant report

Variant	rs786716
Chromosome Location	chr10:26771965-26771966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2244955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2479882	0.89[AFR][1000 genomes]
rs2484425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697158	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702989	0.92[AMR][1000 genomes]
rs702990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702995	0.84[AMR][1000 genomes]
rs786715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs786718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs805022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26764000-26772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:26767200-26772400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:26769200-26774000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:26769200-26774800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:26769400-26773000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:26769400-26776200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:26769400-26776200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
10	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
11	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:26770200-26773800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:26770200-26775400	Weak transcription	Liver	Liver
16	chr10:26770600-26773800	Weak transcription	Adipose Nuclei	Adipose
17	chr10:26770600-26774000	Weak transcription	Small Intestine	intestine
18	chr10:26771000-26772600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:26771200-26772600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:26771400-26772200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:26771400-26775200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:26771600-26772200	Enhancers	Dnd41	blood
23	chr10:26771600-26772400	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr10:26771600-26772400	Enhancers	GM12878-XiMat	blood
25	chr10:26771600-26773000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr10:26771600-26775400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr10:26771600-26776200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr10:26771600-26776200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:26771600-26776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:26771600-26776800	Enhancers	Primary B cells from peripheral blood	blood
31	chr10:26771600-26777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:26771600-26778400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:26771800-26772200	Enhancers	A549	lung
34	chr10:26771800-26772400	Enhancers	Fetal Thymus	thymus
35	chr10:26771800-26773000	Enhancers	Primary hematopoietic stem cells	blood
36	chr10:26771800-26773000	Enhancers	Thymus	Thymus
37	chr10:26771800-26773400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr10:26771800-26775400	Enhancers	Primary B cells from cord blood	blood
39	chr10:26771800-26775400	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr10:26771800-26775800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:26771800-26777400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr10:26771800-26777600	Enhancers	Primary neutrophils fromperipheralblood	blood

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