Variant report

Variant	rs786718
Chromosome Location	chr10:26768284-26768285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2244955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2479882	0.87[AFR][1000 genomes]
rs2484425	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697158	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702989	0.92[AMR][1000 genomes]
rs702990	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702991	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702995	0.84[AMR][1000 genomes]
rs786715	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs786716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs805022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2477507	chr10:26767092-26768745	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
4	esv3365670	chr10:26767196-26769244	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv9007	chr10:26767685-26768488	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3338739	chr10:26767696-26768744	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2129666	chr10:26767771-26768446	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv4688	chr10:26767788-26768450	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3483840	chr10:26767824-26768347	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3509862	chr10:26767840-26768344	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3509860	chr10:26767850-26768358	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3509861	chr10:26767871-26768284	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3484285	chr10:26767879-26768287	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3483951	chr10:26767880-26768314	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv3509863	chr10:26767899-26768302	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26757800-26768800	Weak transcription	Liver	Liver
2	chr10:26758000-26768600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:26758000-26768800	Weak transcription	Pancreas	Pancrea
4	chr10:26758000-26769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:26758000-26771800	Weak transcription	A549	lung
6	chr10:26760000-26768800	Weak transcription	Spleen	Spleen
7	chr10:26761200-26769000	Weak transcription	Lung	lung
8	chr10:26763200-26768800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:26764000-26768600	Weak transcription	Adipose Nuclei	Adipose
10	chr10:26764000-26769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:26764000-26772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:26764400-26768800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:26764600-26768400	Enhancers	Primary T cells from cord blood	blood
14	chr10:26764600-26769000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:26764800-26768800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:26765000-26768800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:26766400-26768400	Enhancers	Primary B cells from cord blood	blood
18	chr10:26766400-26768800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr10:26766400-26768800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:26766600-26768400	Enhancers	Primary hematopoietic stem cells	blood
21	chr10:26766600-26768800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:26766800-26768600	Enhancers	GM12878-XiMat	blood
23	chr10:26766800-26768600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:26767000-26768800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr10:26767200-26769200	Enhancers	Primary B cells from peripheral blood	blood
26	chr10:26767200-26772400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr10:26767400-26768600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:26767400-26768800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:26767400-26769200	Weak transcription	Small Intestine	intestine
31	chr10:26767600-26768400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:26767600-26768600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr10:26767600-26768800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:26767600-26768800	Enhancers	Dnd41	blood
35	chr10:26767800-26768400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:26767800-26768600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:26767800-26768600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:26767800-26768600	Active TSS	Fetal Thymus	thymus
39	chr10:26767800-26768600	Weak transcription	Thymus	Thymus
40	chr10:26767800-26768800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:26767800-26768800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:26767800-26768800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:26767800-26768800	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:26767800-26769000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:26768000-26768400	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links