Variant report

Variant	rs12269590
Chromosome Location	chr10:23322137-23322138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23317599..23320542-chr10:23321884..23323825,3	K562	blood:
2	chr10:23320503..23322830-chr10:23375136..23377538,2	K562	blood:
3	chr10:23321872..23324823-chr10:23325751..23328597,3	K562	blood:

Variant related genes	Relation type
ENSG00000165309	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128359	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013245	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013246	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013247	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013248	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013249	1.00[CEU][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013250	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013251	0.81[CEU][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013252	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013253	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013261	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013262	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013263	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013264	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511171	1.00[ASN][1000 genomes]
rs12243596	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246105	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249666	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257453	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257887	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259839	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs12261088	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261456	0.86[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264038	1.00[ASN][1000 genomes]
rs12763092	1.00[ASN][1000 genomes]
rs12763296	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs12773226	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773873	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784450	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34243414	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34853435	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934641	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627133	1.00[ASN][1000 genomes]
rs35840125	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36053598	1.00[ASN][1000 genomes]
rs59709734	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66468760	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66482823	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66815792	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67480460	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67750769	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67798485	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089828	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs72800633	1.00[ASN][1000 genomes]
rs72812467	1.00[ASN][1000 genomes]
rs7358041	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23320400-23325400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23320600-23325600	Weak transcription	Brain Angular Gyrus	brain

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