Variant report

Variant	rs34243414
Chromosome Location	chr10:23336926-23336927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22970725..22973853-chr10:23334957..23339214,5	K562	blood:
2	chr10:23336874..23339686-chr10:23354474..23356086,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128359	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013245	1.00[ASN][1000 genomes]
rs11013246	1.00[ASN][1000 genomes]
rs11013247	1.00[ASN][1000 genomes]
rs11013248	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013249	0.93[EUR][1000 genomes]
rs11013250	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013251	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013252	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013253	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013255	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013261	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013262	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013263	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013264	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511171	1.00[ASN][1000 genomes]
rs12243596	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246105	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249666	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257453	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259839	1.00[ASN][1000 genomes]
rs12261088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261456	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264038	1.00[ASN][1000 genomes]
rs12269590	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763092	1.00[ASN][1000 genomes]
rs12763296	1.00[ASN][1000 genomes]
rs12773226	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773873	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784450	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34853435	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934641	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627133	1.00[ASN][1000 genomes]
rs35840125	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36053598	1.00[ASN][1000 genomes]
rs59709734	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66468760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66482823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66815792	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67480460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67750769	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67798485	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089828	1.00[ASN][1000 genomes]
rs72800633	1.00[ASN][1000 genomes]
rs72812467	1.00[ASN][1000 genomes]
rs7358041	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23334800-23337000	Enhancers	Colon Smooth Muscle	Colon
2	chr10:23335000-23337000	Enhancers	Fetal Heart	heart
3	chr10:23335200-23340200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:23335200-23341400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:23335200-23341800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:23335600-23337000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:23335800-23337600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr10:23336000-23337000	Flanking Active TSS	K562	blood
9	chr10:23336200-23337000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:23336200-23337000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:23336200-23337000	Enhancers	Stomach Mucosa	stomach
12	chr10:23336200-23337400	Enhancers	Hela-S3	cervix
13	chr10:23336400-23337000	Enhancers	NHEK	skin
14	chr10:23336600-23340800	Weak transcription	Fetal Kidney	kidney
15	chr10:23336600-23341800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:23336600-23348800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:23336800-23337000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:23336800-23337200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:23336800-23340600	Weak transcription	HSMMtube	muscle
20	chr10:23336800-23342000	Weak transcription	Fetal Stomach	stomach

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