Variant report

Variant	rs12270282
Chromosome Location	chr11:105350563-105350564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10160500	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10502048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895814	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895826	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1113611	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226739	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226748	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601207	0.83[EUR][1000 genomes]
rs11601213	0.83[EUR][1000 genomes]
rs11603521	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11823120	0.85[ASN][1000 genomes]
rs12271138	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277692	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284832	0.81[ASN][1000 genomes]
rs12287683	0.81[ASN][1000 genomes]
rs12288207	0.81[ASN][1000 genomes]
rs17468921	0.82[EUR][1000 genomes]
rs1945955	0.81[EUR][1000 genomes]
rs1945956	0.82[EUR][1000 genomes]
rs1945958	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1945960	0.90[AFR][1000 genomes]
rs1945977	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2032412	0.94[ASN][1000 genomes]
rs2032413	0.94[ASN][1000 genomes]
rs4427540	0.82[EUR][1000 genomes]
rs4619125	0.82[EUR][1000 genomes]
rs55860203	0.82[EUR][1000 genomes]
rs55885845	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55888831	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55954762	0.82[EUR][1000 genomes]
rs56219931	0.83[EUR][1000 genomes]
rs61900598	0.82[EUR][1000 genomes]
rs61900606	0.80[EUR][1000 genomes]
rs61900607	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7120172	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7121772	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7122612	0.82[EUR][1000 genomes]
rs7125326	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72986173	0.82[EUR][1000 genomes]
rs7924758	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927980	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7935262	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7938098	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7948827	0.83[ASN][1000 genomes]
rs9651715	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804516	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9988916	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9988917	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105339800-105360200	Weak transcription	Psoas Muscle	Psoas
2	chr11:105345800-105370000	Weak transcription	K562	blood

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